Detailed information of SNP:
|
SNP ID:
sf1005878265(Gbrowse)
Chromosome: chr10 Position: 5878265 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005878265 | T->A | INTERGENIC | None |