Detailed information of SNP:
|
SNP ID:
sf1005880789(Gbrowse)
Chromosome: chr10 Position: 5880789 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 81.32% | 18.68% |
| All Indica | 799 | 78.97% | 21.03% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005880789 | T->C | LOC_Os10g10610(LOC_Os10g10610.1) | INTRON |