Detailed information of SNP:
|
SNP ID:
sf1005888770(Gbrowse)
Chromosome: chr10 Position: 5888770 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.57% | 43.43% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 496 | 16.94% | 83.06% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005888770 | A->C | INTERGENIC | None |