Detailed information of SNP:
|
SNP ID:
sf1005894488(Gbrowse)
Chromosome: chr10 Position: 5894488 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 52.45% | 47.55% |
| All Indica | 792 | 80.43% | 19.57% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 89.76% | 10.24% |
| Indica II | 211 | 69.19% | 30.81% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005894488 | C->T | LOC_Os10g10640(LOC_Os10g10640.1) | Non-Synonymous SNP |