Detailed information of SNP:
|
SNP ID:
sf1005940337(Gbrowse)
Chromosome: chr10 Position: 5940337 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.35% | 10.65% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005940337 | G->A | INTERGENIC | None |