Detailed information of SNP:
|
SNP ID:
sf1005944493(Gbrowse)
Chromosome: chr10 Position: 5944493 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 95.41% | 4.59% |
| All Indica | 764 | 94.24% | 5.76% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 41 | 87.80% | 12.20% |
| Indica I | 372 | 92.47% | 7.53% |
| Indica II | 184 | 99.46% | 0.54% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005944493 | T->A | INTERGENIC | None |