Detailed information of SNP:
|
SNP ID:
sf1005966925(Gbrowse)
Chromosome: chr10 Position: 5966925 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 88.88% | 11.12% |
| All Indica | 792 | 88.38% | 11.62% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 25 | 52.00% | 48.00% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 211 | 76.30% | 23.70% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005966925 | G->A | INTERGENIC | None |