Detailed information of SNP:
|
SNP ID:
sf1006005722(Gbrowse)
Chromosome: chr10 Position: 6005722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 97.22% | 2.78% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 53 | 79.25% | 20.75% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006005722 | G->A | INTERGENIC | None |