Detailed information of SNP:
|
SNP ID:
sf1006031550(Gbrowse)
Chromosome: chr10 Position: 6031550 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.03% | 45.97% |
| All Indica | 797 | 40.40% | 59.60% |
| All Japonica | 496 | 66.94% | 33.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 13.90% | 86.10% |
| Indica II | 212 | 68.40% | 31.60% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 334 | 53.29% | 46.71% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006031550 | T->C | INTERGENIC | None |