Detailed information of SNP:
|
SNP ID:
sf1006045129(Gbrowse)
Chromosome: chr10 Position: 6045129 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 798 | 41.85% | 58.15% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 14.40% | 85.60% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006045129 | C->T | INTERGENIC | None |