Detailed information of SNP:
|
SNP ID:
sf1006067633(Gbrowse)
Chromosome: chr10 Position: 6067633 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.84% | 48.16% |
| All Indica | 797 | 73.27% | 26.73% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 58.02% | 41.98% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006067633 | G->A | INTERGENIC | None |