Detailed information of SNP:
|
SNP ID:
sf1006099123(Gbrowse)
Chromosome: chr10 Position: 6099123 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.96% | 41.04% |
| All Indica | 798 | 38.72% | 61.28% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 10.40% | 89.60% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006099123 | T->C | LOC_Os10g10990(LOC_Os10g10990.2) | INTRON |
| sf1006099123 | T->C | LOC_Os10g10990(LOC_Os10g10990.1) | INTRON |
| sf1006099123 | T->C | LOC_Os10g10990(LOC_Os10g10990.3) | INTRON |