Detailed information of SNP:
|
SNP ID:
sf1006104946(Gbrowse)
Chromosome: chr10 Position: 6104946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.19% | 25.81% |
| All Indica | 799 | 62.33% | 37.67% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006104946 | C->T | INTERGENIC | None |