Detailed information of SNP:
|
SNP ID:
sf1006112897(Gbrowse)
Chromosome: chr10 Position: 6112897 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 73.27% | 26.73% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006112897 | G->A | LOC_Os10g11012(LOC_Os10g11012.1) | INTRON |