Detailed information of SNP:
|
SNP ID:
sf1006137418(Gbrowse)
Chromosome: chr10 Position: 6137418 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.10% | 15.90% |
| All Indica | 796 | 87.94% | 12.06% |
| All Japonica | 496 | 77.62% | 22.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006137418 | G->T | LOC_Os10g11070(LOC_Os10g11070.1) | Non-Synonymous SNP |