Detailed information of SNP:
|
SNP ID:
sf1006141462(Gbrowse)
Chromosome: chr10 Position: 6141462 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 93.38% | 6.62% |
| All Indica | 767 | 93.48% | 6.52% |
| All Japonica | 485 | 92.37% | 7.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 195 | 86.67% | 13.33% |
| Indica Intermediate | 201 | 89.55% | 10.45% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 88 | 76.14% | 23.86% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006141462 | G->C | INTERGENIC | None |