Detailed information of SNP:
|
SNP ID:
sf1006158478(Gbrowse)
Chromosome: chr10 Position: 6158478 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 79.91% | 20.09% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 458 | 48.91% | 51.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 332 | 45.78% | 54.22% |
| Tropical Japonica | 66 | 74.24% | 25.76% |
| Japonica Intermediate | 60 | 38.33% | 61.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006158478 | T->C | LOC_Os10g11100(LOC_Os10g11100.1) | INTRON |