Detailed information of SNP:
|
SNP ID:
sf1006202183(Gbrowse)
Chromosome: chr10 Position: 6202183 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1265 | 62.85% | 37.15% |
| All Indica | 735 | 87.76% | 12.24% |
| All Japonica | 413 | 11.62% | 88.38% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 369 | 85.09% | 14.91% |
| Indica II | 185 | 91.89% | 8.11% |
| Indica Intermediate | 181 | 88.95% | 11.05% |
| Temperate Japonica | 321 | 1.87% | 98.13% |
| Tropical Japonica | 45 | 75.56% | 24.44% |
| Japonica Intermediate | 47 | 17.02% | 82.98% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006202183 | C->T | INTERGENIC | None |