Detailed information of SNP:
|
SNP ID:
sf1006208926(Gbrowse)
Chromosome: chr10 Position: 6208926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 92.73% | 7.27% |
| All Indica | 789 | 91.76% | 8.24% |
| All Japonica | 491 | 93.08% | 6.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 90 | 83.33% | 16.67% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006208926 | C->T | INTERGENIC | None |