Detailed information of SNP:
|
SNP ID:
sf1006258426(Gbrowse)
Chromosome: chr10 Position: 6258426 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 80.61% | 19.39% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006258426 | A->G | INTERGENIC | None |