Detailed information of SNP:
SNP ID:
sf1006279762(Gbrowse)
Chromosome: chr10 Position: 6279762 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 91.12% | 8.88% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 75.65% | 24.35% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 65.97% | 34.03% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 89.71% | 10.29% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1006279762 | A->G | INTERGENIC | None |