Detailed information of SNP:
|
SNP ID:
sf1006283757(Gbrowse)
Chromosome: chr10 Position: 6283757 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 82.06% | 17.94% |
| All Indica | 793 | 92.94% | 7.06% |
| All Japonica | 495 | 62.02% | 37.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 91.91% | 8.09% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 52.99% | 47.01% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006283757 | T->A | INTERGENIC | None |