Detailed information of SNP:
|
SNP ID:
sf1006284180(Gbrowse)
Chromosome: chr10 Position: 6284180 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 90.49% | 9.51% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 487 | 73.10% | 26.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 66.97% | 33.03% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006284180 | C->A | INTERGENIC | None |