Detailed information of SNP:
|
SNP ID:
sf1006291452(Gbrowse)
Chromosome: chr10 Position: 6291452 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 97.60% | 2.40% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006291452 | A->G | LOC_Os10g11310(LOC_Os10g11310.1) | INTRON |
| sf1006291452 | A->G | LOC_Os10g11310(LOC_Os10g11310.2) | INTRON |
| sf1006291452 | A->G | LOC_Os10g11310(LOC_Os10g11310.3) | INTRON |