Detailed information of SNP:
|
SNP ID:
sf1006291510(Gbrowse)
Chromosome: chr10 Position: 6291510 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 69.80% | 30.20% |
| All Indica | 798 | 59.65% | 40.35% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006291510 | A->G | LOC_Os10g11310(LOC_Os10g11310.1) | INTRON |
| sf1006291510 | A->G | LOC_Os10g11310(LOC_Os10g11310.2) | INTRON |
| sf1006291510 | A->G | LOC_Os10g11310(LOC_Os10g11310.3) | INTRON |