Detailed information of SNP:
|
SNP ID:
sf1006292968(Gbrowse)
Chromosome: chr10 Position: 6292968 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 78.77% | 21.23% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 496 | 77.82% | 22.18% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006292968 | A->G | INTERGENIC | None |