Detailed information of SNP:
SNP ID:
sf1006293093(Gbrowse)
Chromosome: chr10 Position: 6293093 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 78.63% | 21.37% |
All Indica | 799 | 85.48% | 14.52% |
All Japonica | 496 | 77.82% | 22.18% |
Aus | 67 | 0.00% | 100.00% |
Indica I | 375 | 95.47% | 4.53% |
Indica II | 213 | 72.77% | 27.23% |
Indica Intermediate | 211 | 80.57% | 19.43% |
Temperate Japonica | 335 | 78.81% | 21.19% |
Tropical Japonica | 93 | 75.27% | 24.73% |
Japonica Intermediate | 68 | 76.47% | 23.53% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1006293093 | A->T | INTERGENIC | None |