Detailed information of SNP:



SNP ID: sf1006293093(Gbrowse)

Chromosome: chr10

Position: 6293093
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1418 78.63% 21.37%
All Indica799 85.48% 14.52%
All Japonica496 77.82% 22.18%
Aus67 0.00% 100.00%
Indica I375 95.47% 4.53%
Indica II213 72.77% 27.23%
Indica Intermediate211 80.57% 19.43%
Temperate Japonica335 78.81% 21.19%
Tropical Japonica93 75.27% 24.73%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1006293093 A->T INTERGENIC None