Detailed information of SNP:
|
SNP ID:
sf1006293174(Gbrowse)
Chromosome: chr10 Position: 6293174 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.90% | 21.10% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 495 | 77.78% | 22.22% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006293174 | C->T | INTERGENIC | None |