Detailed information of SNP:
|
SNP ID:
sf1006310026(Gbrowse)
Chromosome: chr10 Position: 6310026 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.17% | 46.83% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006310026 | A->G | INTERGENIC | None |