Detailed information of SNP:



SNP ID: sf1006328909(Gbrowse)

Chromosome: chr10

Position: 6328909
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 86.63% 13.37%
All Indica795 88.43% 11.57%
All Japonica496 81.05% 18.95%
Aus67 100.00% 0.00%
Indica I375 98.67% 1.33%
Indica II213 73.71% 26.29%
Indica Intermediate207 85.02% 14.98%
Temperate Japonica335 83.88% 16.12%
Tropical Japonica94 78.72% 21.28%
Japonica Intermediate67 70.15% 29.85%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1006328909 C->T INTERGENIC None