Detailed information of SNP:
|
SNP ID:
sf1006328909(Gbrowse)
Chromosome: chr10 Position: 6328909 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 86.63% | 13.37% |
| All Indica | 795 | 88.43% | 11.57% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006328909 | C->T | INTERGENIC | None |