Detailed information of SNP:
|
SNP ID:
sf1006361473(Gbrowse)
Chromosome: chr10 Position: 6361473 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 56.05% | 43.95% |
| All Indica | 764 | 30.76% | 69.24% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 355 | 25.63% | 74.37% |
| Indica II | 207 | 36.71% | 63.29% |
| Indica Intermediate | 202 | 33.66% | 66.34% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006361473 | C->T | LOC_Os10g11454(LOC_Os10g11454.1) | INTRON |