Detailed information of SNP:
|
SNP ID:
sf1006369394(Gbrowse)
Chromosome: chr10 Position: 6369394 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 83.05% | 16.95% |
| All Indica | 798 | 84.84% | 15.16% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006369394 | G->A | INTERGENIC | None |