Detailed information of SNP:
|
SNP ID:
sf1006397990(Gbrowse)
Chromosome: chr10 Position: 6397990 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.55% | 38.45% |
| All Indica | 798 | 67.17% | 32.83% |
| All Japonica | 496 | 45.97% | 54.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 212 | 46.23% | 53.77% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 32.54% | 67.46% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006397990 | T->C | INTERGENIC | None |