Detailed information of SNP:
|
SNP ID:
sf1006445719(Gbrowse)
Chromosome: chr10 Position: 6445719 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.80% | 45.20% |
| All Indica | 798 | 33.83% | 66.17% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 12.57% | 87.43% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006445719 | T->C | INTERGENIC | None |