Detailed information of SNP:
|
SNP ID:
sf1006472506(Gbrowse)
Chromosome: chr10 Position: 6472506 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1275 | 83.06% | 16.94% |
| All Indica | 657 | 73.97% | 26.03% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 291 | 88.66% | 11.34% |
| Indica II | 190 | 58.42% | 41.58% |
| Indica Intermediate | 176 | 66.48% | 33.52% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006472506 | A->T | INTERGENIC | None |