Detailed information of SNP:
|
SNP ID:
sf1006472542(Gbrowse)
Chromosome: chr10 Position: 6472542 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1307 | 67.33% | 32.67% |
| All Indica | 690 | 44.93% | 55.07% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 42.68% | 57.32% |
| Indica II | 187 | 44.92% | 55.08% |
| Indica Intermediate | 182 | 48.90% | 51.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006472542 | T->C | INTERGENIC | None |