Detailed information of SNP:
|
SNP ID:
sf1006484557(Gbrowse)
Chromosome: chr10 Position: 6484557 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 68.30% | 31.70% |
| All Indica | 789 | 94.30% | 5.70% |
| All Japonica | 441 | 17.01% | 82.99% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 323 | 4.02% | 95.98% |
| Tropical Japonica | 62 | 75.81% | 24.19% |
| Japonica Intermediate | 56 | 26.79% | 73.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006484557 | T->C | LOC_Os10g11696(LOC_Os10g11696.1) | Synonymous |