Detailed information of SNP:
|
SNP ID:
sf1006501836(Gbrowse)
Chromosome: chr10 Position: 6501836 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.51% | 25.49% |
| All Indica | 797 | 60.23% | 39.77% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006501836 | C->T | LOC_Os10g11730(LOC_Os10g11730.1) | INTRON |