Detailed information of SNP:
|
SNP ID:
sf1006505038(Gbrowse)
Chromosome: chr10 Position: 6505038 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 95.92% | 4.08% |
| All Indica | 775 | 95.10% | 4.90% |
| All Japonica | 477 | 96.86% | 3.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.01% | 6.99% |
| Indica II | 203 | 98.52% | 1.48% |
| Indica Intermediate | 200 | 95.50% | 4.50% |
| Temperate Japonica | 326 | 96.32% | 3.68% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006505038 | A->T | INTERGENIC | None |