Detailed information of SNP:
|
SNP ID:
sf1006510271(Gbrowse)
Chromosome: chr10 Position: 6510271 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 80.13% | 19.87% |
| All Indica | 764 | 85.21% | 14.79% |
| All Japonica | 493 | 84.79% | 15.21% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 347 | 94.52% | 5.48% |
| Indica II | 208 | 73.56% | 26.44% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006510271 | C->T | INTERGENIC | None |