Detailed information of SNP:
|
SNP ID:
sf1006514599(Gbrowse)
Chromosome: chr10 Position: 6514599 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 67.82% | 32.18% |
| All Indica | 798 | 44.74% | 55.26% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006514599 | G->A | LOC_Os10g11750(LOC_Os10g11750.1) | INTRON |