Detailed information of SNP:
|
SNP ID:
sf1006517714(Gbrowse)
Chromosome: chr10 Position: 6517714 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.31% | 48.69% |
| All Indica | 796 | 16.71% | 83.29% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 6.68% | 93.32% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 209 | 22.01% | 77.99% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006517714 | T->C | LOC_Os10g11750(LOC_Os10g11750.1) | INTRON |