Detailed information of SNP:
|
SNP ID:
sf1006517774(Gbrowse)
Chromosome: chr10 Position: 6517774 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 55.25% | 44.75% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 494 | 1.82% | 98.18% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 4.40% | 95.60% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006517774 | C->T | LOC_Os10g11750(LOC_Os10g11750.1) | INTRON |