Detailed information of SNP:
|
SNP ID:
sf1006522158(Gbrowse)
Chromosome: chr10 Position: 6522158 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 80.97% | 19.03% |
| All Indica | 798 | 86.09% | 13.91% |
| All Japonica | 492 | 84.96% | 15.04% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 90 | 42.22% | 57.78% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 10 | 0.00% | 100.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006522158 | C->A | LOC_Os10g11750(LOC_Os10g11750.1) | INTRON |