Detailed information of SNP:
|
SNP ID:
sf1006535302(Gbrowse)
Chromosome: chr10 Position: 6535302 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 86.49% | 13.51% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 493 | 84.79% | 15.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 90 | 44.44% | 55.56% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006535302 | G->T | LOC_Os10g11794(LOC_Os10g11794.1) | INTRON |