Detailed information of SNP:
|
SNP ID:
sf1006537000(Gbrowse)
Chromosome: chr10 Position: 6537000 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 58.35% | 41.65% |
| All Indica | 751 | 26.36% | 73.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 16.08% | 83.92% |
| Indica II | 205 | 39.51% | 60.49% |
| Indica Intermediate | 204 | 30.39% | 69.61% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006537000 | T->G | LOC_Os10g11794(LOC_Os10g11794.1) | Non-Synonymous SNP |