Detailed information of SNP:
|
SNP ID:
sf1006537885(Gbrowse)
Chromosome: chr10 Position: 6537885 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.68% | 14.32% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006537885 | C->T | LOC_Os10g11794(LOC_Os10g11794.1) | Non-Synonymous SNP |