Detailed information of SNP:
|
SNP ID:
sf1006538319(Gbrowse)
Chromosome: chr10 Position: 6538319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 80.10% | 19.90% |
| All Indica | 797 | 86.20% | 13.80% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006538319 | G->A | LOC_Os10g11794(LOC_Os10g11794.1) | INTRON |