Detailed information of SNP:
|
SNP ID:
sf1006540347(Gbrowse)
Chromosome: chr10 Position: 6540347 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 94.76% | 5.24% |
| All Indica | 794 | 97.23% | 2.77% |
| All Japonica | 487 | 99.38% | 0.62% |
| Aus | 56 | 17.86% | 82.14% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006540347 | G->A | LOC_Os10g11794(LOC_Os10g11794.1) | INTRON |