Detailed information of SNP:
|
SNP ID:
sf1006545533(Gbrowse)
Chromosome: chr10 Position: 6545533 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 799 | 16.90% | 83.10% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 7.47% | 92.53% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006545533 | G->A | LOC_Os10g11794(LOC_Os10g11794.1) | INTRON |